PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000343G0780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 262aa    MW: 27769.9 Da    PI: 6.7847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000343G0780genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-1987137155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PH01000343G0780  87 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 137
                      57*****887.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1387137IPR001471AP2/ERF domain
CDDcd000182.25E-3087147No hitNo description
Gene3DG3DSA:3.30.730.101.9E-3288146IPR001471AP2/ERF domain
SMARTSM003806.9E-3888151IPR001471AP2/ERF domain
PROSITE profilePS5103224.03988145IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2288146IPR016177DNA-binding domain
PRINTSPR003675.7E-1189100IPR001471AP2/ERF domain
PRINTSPR003675.7E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEADAIHAPT TSSDSDSRVI DGAQELSKNS KPNHLKRKRT TTPAPAPSSQ KATAEATDGK  60
RGEESSSCTA VDAHTASQKM GRACRHPSYR GVRRRSWGKW VSEIREPRKK SRIWLGTFPT  120
AEMAARAHDV AALAIKGRGA HLNFPHLAHA LPRPASASPA DIQAAAAMAA ADQCKSSSSV  180
AETTETSSAA SSGMAGSGER ENSLFDLPDL LLDLRDGLWC SPIWTAAAAD EYDCGDAAAL  240
HEPILWAEQC WMDASAPVQP D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1589145663ATERF1
3gcc_A9e-1589145663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559757e-90AK355975.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028H04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646010.15e-77PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ78e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM0Z1Y25e-90M0Z1Y2_HORVD; Uncharacterized protein
STRINGMLOC_75601.12e-89(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-38ERF family protein